Docker运行Samtools截取基因组序列

docker pull omicsclass/samtools
docker run --rm -v /d/samtools:/work -it omicsclass/samtools:latest
samtools faidx Arabidopsis_thaliana.TAIR10.31.dna.toplevel.fa
samtools faidx Arabidopsis_thaliana.TAIR10.31.dna.toplevel.fa Pt> Pt.fa             #提取叶绿体序列
samtools faidx Arabidopsis_thaliana.TAIR10.31.dna.toplevel.fa Pt:100-1000> Pt.fa    #提取叶绿体第100到1000碱基的序列