Docker运行Samtools截取基因组序列

  sre

docker pull omicsclass/samtools
docker run --rm -v /d/samtools:/work -it omicsclass/samtools:latest
samtools faidx Arabidopsis_thaliana.TAIR10.31.dna.toplevel.fa
samtools faidx Arabidopsis_thaliana.TAIR10.31.dna.toplevel.fa Pt> Pt.fa             #提取叶绿体序列
samtools faidx Arabidopsis_thaliana.TAIR10.31.dna.toplevel.fa Pt:100-1000> Pt.fa    #提取叶绿体第100到1000碱基的序列

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